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Pathology · Clinical microbiology (culture plate image analysis)
PhenoMATRIX
Copan Wasp Srl
PhenoMATRIX is the plate-reading layer of Copan's WASPLab automation line, and its evidence base is unusual in the catalogue: seven years of peer-reviewed laboratory studies from Europe and North America preceded a US clearance that only arrived in January 2026, eight months after an FDA recall for marketing without one. The cleared scope is narrower than the literature. It covers four routine media, and every image still goes to a human.
Performance Metrics
Clinical Evidence
Two bodies of evidence exist, and they do not cover the same product configuration. The first is the FDA clinical validation in the K251511 decision summary: three US laboratories, 5,845 plate images (3,856 body fluid and aerobic cultures at site A, 418 clean-catch urines at site B, 1,571 clean-catch, catheter and paediatric-bag urines at site C), each image classified by the software and then reviewed by the laboratory's microbiologist on the WASPLab screen. Growth detection reached 100% positive percent agreement on blood agar (2,478 of 2,478 plates) with 98.3% negative percent agreement, 99.7% and 99.0% on MacConkey, 100% and 96.4% on CHROMagar Orientation. Morphology labels agreed at 98.1% to 100% by organism group. Rule-based sorting agreed with the microbiologist's classification at 98.3%, 98.1% and 92.6% across the three sites. The weak spots are in the tables rather than the summary: semi-quantification of heavy growth on CHROMagar Orientation agreed in 78.6% of plates (the software under-called 36 of 168), the 10⁴ CFU/mL MacConkey bin at site B fell to 37.9% with a 1 microlitre loop, and the "two isolates" mixed-culture category at site C reached 64.4%. The FDA accepted those figures because every image is reviewed by a trained microbiologist before a result is defined. The second body is peer-reviewed and largely European. Van and colleagues (J Clin Microbiol 2019) enrolled 480 throat swabs from children and read Colorex Strep A agar with the chromogenic detection module: 90.6% sensitivity and 94.0% specificity against a PCR-anchored reference, versus 87.5% and 97.7% for technologist reading. The software found three extra true positives but called more false positives, with a positive predictive value of 79.1% against 90.3%. Baker and colleagues (J Clin Microbiol 2020) tested 676 vaginal-rectal LIM broths on chromID Strepto B. The software missed no culture that technologists called positive, but against the composite reference its sensitivity was 95.5% and its specificity 63.0%, with a positive predictive value of 43.2%. Foschi and colleagues (Diagn Microbiol Infect Dis 2021) analysed 1,068 recto-vaginal swabs prospectively on CHROMagar StrepB and reported the same pattern: 100% sensitivity, 64.5% specificity and a positive predictive value of 32.8%, with viridans streptococci the main false positives. Dauwalder and colleagues (Clin Microbiol Infect 2021) built a tailored urine workflow: a second software version reached 87.5% to 97% agreement with technologists by specimen type and 92% in routine use three months after go-live. Cherkaoui and colleagues at Geneva University Hospitals then published three screening studies, each analysing consecutive routine specimens prospectively with technologists blinded: MRSA on chromogenic media in 17,223 specimens, 99.8% sensitivity and 99.1% specificity for PhenoMATRIX, and 100% and 95.2% for PhenoMATRIX PLUS on a further 1,409 (J Clin Microbiol 2024); Group B Streptococcus on 830 validation plates, 100% sensitivity and 90.2% specificity, negative predictive value 100% and positive predictive value 60.3% (Eur J Clin Microbiol Infect Dis 2025); and a 4,517-specimen rectal screen for carbapenemase producers, ESBL, Acinetobacter and VRE with no false negatives (Front Microbiol 2025). Davidson and colleagues (J Clin Microbiol 2026) compared turnaround before and after implementation at two Canadian laboratories. At the tertiary site the software alone did not shorten reporting: final reports by 18 hours fell from 33.0% to 22.2%. Adding automatic release of negatives (PhenoMATRIX PLUS) raised that to 49.6% and cut mean turnaround by about 1 h 19 min against the baseline. The community laboratory gained about 5 h 18 min, but it also moved its review shift earlier, and the authors say the gain was not due to the software alone. One co-author is a Copan Diagnostics employee. Read together, the pattern is consistent: near-complete sensitivity for growth and for the target morphology, with specificity that varies by medium and by how the laboratory tunes its rules. Most of the European studies used chromogenic screening media (chromID Strepto B, MRSA, ESBL, OXA-48, VRE) and the PLUS auto-release workflow, neither of which is inside the US cleared indication. There is no randomised trial and no patient-outcome study. The evidence grade is prospective on the strength of the Bologna study and the three Geneva studies, which state that routine specimens were analysed prospectively. The AurisMark is one. Approval and evidence would support two, but the rubric asks for a manageable safety record, and the FDA register carried two open Class II recalls at review: one from May 2025 for distribution without a premarket notification, and one from June 2026 in which a WASPLab interface bug could send the software's suggested result to the laboratory system instead of the microbiologist's correction. That second event touches the exact safeguard the clearance rests on. Re-evaluate once the FDA terminates both recalls.
| Study | Design | n | Sensitivity | Specificity | AUC | Published |
|---|---|---|---|---|---|---|
| Copan Wasp Srl, FDA 510(k) clinical validation at three US clinical laboratories (manufacturer-sponsored) | RetrospectiveRetrospective | 5,845 | PPA 99.5–100% (growth detection, by medium) | NPA 96.4–100% (growth detection, by medium) | — | FDA 510(k) decision summary K251511 (cleared 22 January 2026), Tables 6–10. 5,845 plate images: 3,856 body-fluid and aerobic cultures (site A), 418 clean-catch urines (site B), 1,571 clean-catch, catheter and paediatric-bag urines (site C). Morphology PPA 98.1–100%; beta-haemolysis 100% PPA and NPA (1,571 plates); rule-based classification agreement 98.3%, 98.1% and 92.6% by site. Simulators loaded with the laboratories' plate images and compared with microbiologist digital review; the summary does not describe prospective enrolment, so the design is recorded as retrospective. |
| Van TT, Mata K, Dien Bard J | ProspectiveProspective | 480 | 90.6% (87/96; software reading of Colorex Strep A agar) | 94.0% (361/384; PPV 79.1%) | — | J Clin Microbiol 2019;57(11):e00811-19 (PMID 31434725; DOI 10.1128/JCM.00811-19; PMC6812993). Group A Streptococcus from throat swabs of children seen in the Children's Hospital Los Angeles emergency department, enrolled September 2017 to January 2019 under an IRB protocol. Remnant ESwabs were frozen after standard-of-care PCR and plated later at a second facility. Composite reference of MALDI-TOF-confirmed culture plus repeat-positive PCR; 96 true positives. Technologist reading of the same images 87.5% and 97.7% (PPV 90.3%); PCR 96.9% and 100%. The software found three true positives that manual reading missed and had 23 false positives against 9 for technologists. Copan provided the WASPLab, the software and data analysis services. The paper does not use the word prospective; specimens were enrolled over time and tested from frozen remnants. |
| Baker J, Timm K, Faron M, Ledeboer N, Culbreath K | ProspectiveProspective | 676 | 95.5% vs the composite reference (147/154); 100% vs technologist reading of the same images at 48 h | 63.0% vs the composite reference (PPV 43.2%); 67.3% vs technologist reading | — | J Clin Microbiol 2020;59(1):e01902-19 (PMID 33087433; DOI 10.1128/JCM.01902-19; PMC7771474). 676 residual vaginal-rectal swabs in LIM broth enrolled at TriCore Reference Laboratories and the Medical College of Wisconsin, enriched per routine and plated on chromID Strepto B with the chromogenic detection module; GBS prevalence 22.8%. Against the composite reference (MALDI-TOF-confirmed colony or two positive NAATs) the software had 193 false positives and 7 false negatives; technologist reading gave 90.3% and 95.4%, NAAT 96.8% and 97.7%. The abstract's 100% sensitivity is against technologist reading, not the composite reference (Table 2 vs Table 3). The software never called a technologist-positive culture negative at 48 h and found eight true positives technologists missed. The paper does not use the word prospective; broths were plated fresh after routine enrichment. |
| Dauwalder O, Michel A, Eymard C, et al. | ProspectiveProspective | 7,714 | 87.5–97% agreement with technologist result (second software version, by urine type, before and after rule revision) | 92% overall agreement in routine use at three months | — | Clin Microbiol Infect 2021;27(8):1168.e1-1168.e6 (PMID 33038526; DOI 10.1016/j.cmi.2020.09.056). Tailored urine workflow: two validation collections (96 and 135 nephrostomy/urostomy, 948 and 1,257 catheter, 3,251 and 2,027 midstream urines) compared two software versions with technologist reading, then 629 further urines monitored three months after go-live. The first version agreed in 65–83%; the second in 87.5–97%. n counts the two validation collections; the routine-monitoring phase is why the design is recorded as prospective. |
| Foschi C, Turello G, Lazzarotto T, Ambretti S | ProspectiveProspective | 1,068 | 100% (GBS on CHROMagar StrepB; no false negatives) | 64.5% (PPV 32.8%, NPV 100%) | — | Diagn Microbiol Infect Dis 2021;101(1):115427 (PMID 34120035; DOI 10.1016/j.diagmicrobio.2021.115427; open access, full text read from the University of Bologna repository, hdl 11585/826449). 1,068 recto-vaginal swabs in LIM broth sent to S. Orsola-Malpighi Hospital, Bologna, for GBS detection, December 2020 to February 2021, analysed prospectively on CHROMagar StrepB. The software sorted 587 plates as negative with no false negatives and 481 as potentially positive, of which 158 were confirmed GBS by MALDI-TOF. Of the 323 false positives, 212 showed no pink colonies at manual reading some hours later and 111 grew other organisms, mainly viridans streptococci. No external funding; no competing interests declared. |
| Cherkaoui A, Renzi G, Schrenzel J (same group as the Geneva University Hospitals GBS study) | ProspectiveProspective | 17,223 | 99.8% (PhenoMATRIX, MRSA on chromogenic media; 95% CI 99.2–99.9%) | 99.1% (95% CI 99.0–99.2%) | — | J Clin Microbiol 2024;62(1):e0115223 (PMID 38126761; DOI 10.1128/jcm.01152-23; PMC10793248). Nasal and inguinal/perineal ESwabs; 6,771 specimens for machine learning, then 17,223 consecutive specimens (9 February 2022 to 8 May 2023, positivity 5%) whose images were analysed prospectively with technologists blinded: 866 of 868 positives detected, 146 false positives. PhenoMATRIX PLUS then ran on 1,409 more (23 May to 3 July 2023) with 100% sensitivity (95% CI 92.1–100%) and 95.2% specificity; all 1,297 negatives auto-released to the LIS. Internal funding; no conflicts declared. |
| Cherkaoui A, Renzi G, Schrenzel J (Geneva University Hospitals) | ProspectiveProspective | 830 | 100% (GBS on chromID Strepto B, validation set; 95% CI 96.6–100%) | 90.2% (95% CI 87.8–92.1%) | — | Eur J Clin Microbiol Infect Dis 2025;44(1):63-69 (PMID 39520619; DOI 10.1007/s10096-024-04985-7). 9,107 vagino-rectal specimens from pregnant women (2021–2023) compared direct chromogenic plating with LIM-broth enrichment; 8,768 plate images trained the software and 830 validated it: 437 consecutive direct platings (100% sensitivity, 88.2% specificity) and 393 LIM-broth subcultures (100% and 92.0%), analysed prospectively with technologists blinded. Negative predictive value 100% (95% CI 99.4–100%), positive predictive value 60.3%; 71 false positives. n counts validation plates. PMC11739212; internal funding, no conflicts declared. |
| Cherkaoui A, Renzi G, Tittel-Elmer M, Schrenzel J (same group as the Geneva University Hospitals GBS study) | ProspectiveProspective | 4,517 | No false negatives reported (PhenoMATRIX PLUS, rectal MDRO screen) | Agreement 98.5% (no growth), 99.6% (negative), 74.8% (send to reader) | — | Front Microbiol 2025;16:1624411 (PMID 40687850; DOI 10.3389/fmicb.2025.1624411). Institution-wide rectal ESwab screening for carbapenemase-producing organisms, ESBL, Acinetobacter and VRE on chromID ESBL, chromID OXA-48, CHROMagar Acinetobacter and chromID VRE; 22,585 plate images from 4,517 specimens analysed prospectively after a learning phase on 16,667 plates. Sensitivity and specificity are not reported as such; the abstract gives output agreements and states no false negatives. |
| Davidson R, Heinstein C, Patriquin G, Goneau LW, Brown LA, Hill BJ (Nova Scotia Health, Dynacare, University of Toronto; one author employed by Copan Diagnostics) | RetrospectiveRetrospective | 0 | Not reported (turnaround study) | Not reported | — | J Clin Microbiol 2026;64(8):e0035426 (PMID 42429559; DOI 10.1128/jcm.00354-26; PMC13463692). Before-and-after comparison of urine-culture turnaround from LIS timestamps in single-month snapshots: QEII Halifax in June 2023, September 2024 and May 2025, Dynacare Brampton in May 2022 and May 2023. Tertiary site: the software alone did not reduce turnaround (the abstract says it was associated with longer turnaround), and final reports by 18 h fell from 33.0% to 22.2%; with automatic release of negatives (PhenoMATRIX PLUS) they rose to 49.6% and mean turnaround fell about 1 h 19 min against baseline. Community site: mean turnaround fell about 5 h 18 min after implementation, alongside a move of urine screening from evening-only to day and evening shifts; the authors say the gain was not solely due to the software. Volumes are given per day (about 170 and 1,600 urines), not as a specimen count, so n is recorded as 0. The paper does not describe prospective enrolment, so the design is recorded as retrospective. |
Inside the algorithm
Editorial featureHow a plate becomes a sorted folder.
Five stages — from raw input to verdict — drawn from manufacturer documentation and the public regulatory record.
- INGEST
- NORMALISE
- DETECT
- LOCALISE
- VERDICT
Stage 01 · INGEST
A barcoded plate enters WASPLab and is incubated to schedule.
PhenoMATRIX never sees a physical plate. Specimens are streaked by the WASP front end, each plate carries a linear barcode, and the WASPLab conveyor loads it into an incubator. After the incubation time set for that medium, the imaging station photographs the plate and stores the image on the WASPLab server. The physical plate stays inside the incubator until a person decides what happens to it.
The cleared inputs are four media families: blood-based agar (tryptic soy, Columbia, CNA, Schaedler and streptococcal selective plates), chocolate agar, MacConkey agar and CHROMagar Orientation, as whole plates or bi-plates, from urine, respiratory, genital, vaginal-rectal, body-fluid, skin and stool specimens.
Input
WASPLab plate image plus LIS data
Inside the Auris+ Listing
Five more sections complete this device’s Auris+ Listing.
Decision Ledger
ProPro unlocks a private, cross-vendor log of every case you read on this device — what the AI called, what you concluded, and a one-line reason if you overrode it. Ready for the EU AI Act's deployer logging obligations when they land in 2028.
Clinical Evidence Deep Dive
ProPro unlocks the structured clinical-evidence summary — study count, target patient population, and a tabular accuracy-metrics view drawn from peer-reviewed sources.
Peer-Reviewed Publications
ProPro unlocks the curated peer-reviewed publication list with PubMed cross-links — the citation backbone of every editorial verdict.
Post-Market & Regulatory Conditions
ProPro unlocks the post-market surveillance summary, recall record, and the conditions of approval that bound real-world use.
AI Algorithm Version History
ProPro unlocks the chronological record of algorithm version changes — what changed when, drawn from manufacturer changelogs and regulatory filings.
Regulatory Approvals
Class C
Safety Record
Z-1812-2025 (recall event 96765), posted 21 May 2025, product code KZB, all software versions, 14 units in 13 US states. Reason recorded by FDA: the plate interpretation and workup software had no premarket approval or premarket notification, so colony count or morphology from images might not reflect the actual plate. Root cause: no marketing application. Customers instructed to verify images against the physical agar plate. Status Open, Classified at review on 2026-09-10; the 510(k) received 16 May 2025 was cleared 22 January 2026.
Z-2854-2026 (recall event 99302), posted 31 July 2026, classified 31 July 2026, product code JQP, WASPLab WebApp versions 2.33.1, 2.33.3 and 2.34.2, one US unit (Arizona). A software bug could, under specific conditions, prevent the user's selected result from overwriting the result suggested by PhenoMATRIX, so the suggested result could be transmitted to the LIS instead. Corrected WebApp released 15 June 2026; customers asked to schedule the update and check results sent to the LIS where they had changed the suggestion. Root cause under investigation by the firm at posting.
Report 3009288740-2026-00001, received 15 June 2026, device WASPLab (product code JQP): the same WebApp defect as Z-2854-2026, described as not allowing the user to overwrite the PhenoMATRIX suggestion in some cases. Malfunction, no patient harm reported.
The FDA register lists two open Class II recalls. Z-1812-2025, initiated 6 May 2025 and posted 21 May 2025, covered all PhenoMATRIX software versions at 14 US installations across 13 states. The stated reason was that the plate-interpretation software had no premarket approval or premarket notification, so colony counts or morphology from images might not reflect the physical plate; customers were told to check images against the actual agar plate. The 510(k) that resolves the underlying gap was received ten days later, on 16 May 2025, and cleared on 22 January 2026, but the recall record still read "Open, Classified" in September 2026. Z-2854-2026, initiated 16 June 2026 and posted 31 July 2026, is a WASPLab WebApp defect (versions 2.33.1, 2.33.3 and 2.34.2) that under specific conditions prevented the microbiologist's chosen result from overwriting the PhenoMATRIX suggestion, so the suggested result could be transmitted to the laboratory information system instead. The firm released a corrected WebApp on 15 June 2026; one US unit in Arizona was in scope, and the manufacturer filed a matching MAUDE malfunction report (event 9 June 2026). No injury has been reported in either record. The design boundary is the same in every study and in the clearance: the software sorts and suggests, and a trained person defines the result. The 2026 defect matters because it sat on that boundary.
Intended Use & Indications
The FDA indications for use (K251511) read: PhenoMATRIX is a WASPLab optional module intended for the automatic sorting of images of blood-based agar, chocolate agar, MacConkey agar, and CHROMagar Orientation culture media plates according to classification parameters based on Image Analysis Software results and clinical and demographic data. Image Analysis Software performs semi-quantitative and/or qualitative analysis of culture media plates by detecting microbial growth, estimating colony counts and differentiating isolates based on phenotypic colony characteristics. The system determines how the images should be sorted based on image analysis results in addition to patient data according to expert rules defined by the laboratory. All images shall be evaluated by trained personnel for final assessment and result definition. Prescription use only. The FDA decision summary lists the specimen types the software is intended to analyse: urine, upper and lower respiratory tract, genital swabs, vaginal-rectal swabs, body fluids, skin and stool.